Index

_

__bids_version__ (in module bidsschematools)

__version__ (in module bidsschematools)

A

append_filename_template_legend() (in module bidsschematools.render.text) Array (class in bidsschematools.expressions) as_path() (bidsschematools.data.load method) aslcontext (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Aslcontext (class in bidsschematools.types.context) (class in bidsschematools.types.protocols)

associations (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) Associations (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) ASTNode (class in bidsschematools.expressions) atomize() (in module bidsschematools.expressions) axis_codes (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property)

B

BIDSSchemaError bidsschematools module bidsschematools.data module bidsschematools.expressions module bidsschematools.render module bidsschematools.render.tables module bidsschematools.render.text module bidsschematools.render.tsv module bidsschematools.render.utils module bidsschematools.rules module bidsschematools.schema module

bidsschematools.types module bidsschematools.types.context module bidsschematools.types.namespace module bidsschematools.types.protocols module bidsschematools.utils module bidsschematools.validator module BinOp (class in bidsschematools.expressions) build() (bidsschematools.types.namespace.Namespace class method) bval (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Bval (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) bvec (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Bvec (class in bidsschematools.types.context) (class in bidsschematools.types.protocols)

C

cached() (bidsschematools.data.load method) channels (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Channels (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) clear() (bidsschematools.types.namespace.Namespace method) columns (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) combine_extensions() (in module bidsschematools.render.utils)

comment (bidsschematools.types.context.Gzip attribute) (bidsschematools.types.protocols.Gzip property) configure_logger() (in module bidsschematools.utils) Context (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) coordsystem (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Coordsystem (class in bidsschematools.types.context) (class in bidsschematools.types.protocols)

D

dataset (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) Dataset (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) dataset_description (bidsschematools.types.context.Dataset attribute) (bidsschematools.types.protocols.Dataset property) datatype (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) datatypes (bidsschematools.types.context.Dataset attribute) (bidsschematools.types.protocols.Dataset property) default() (bidsschematools.types.namespace.MappingEncoder method)

define_allowed_top_directories() (in module bidsschematools.render.text) define_common_principles() (in module bidsschematools.render.text) dereference() (in module bidsschematools.schema) describe_valid_values() (in module bidsschematools.render.utils) dim (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property) dim_info (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property) DimInfo (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) drop_unused_entities() (in module bidsschematools.render.utils)

E

electrodes (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Electrodes (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) Element (class in bidsschematools.expressions) encode() (bidsschematools.types.namespace.MappingEncoder method) entities (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property)

events (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Events (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) expand() (in module bidsschematools.types.namespace) export_schema() (in module bidsschematools.schema) extension (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property)

F

fence() (in module bidsschematools.render.tsv) filename (bidsschematools.types.context.Gzip attribute) (bidsschematools.types.protocols.Gzip property) filter_schema() (in module bidsschematools.schema)

flatten_enums() (in module bidsschematools.schema) flatten_multiindexed_columns() (in module bidsschematools.render.utils) freq (bidsschematools.types.context.DimInfo attribute) (bidsschematools.types.protocols.DimInfo property) Function (class in bidsschematools.expressions)

G

get() (bidsschematools.types.namespace.Namespace method) get_bundled_schema_path() (in module bidsschematools.utils) get_link() (in module bidsschematools.render.utils) get_logger() (in module bidsschematools.utils) get_relpath() (in module bidsschematools.render.utils)

get_schema_validator() (in module bidsschematools.schema) gzip (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) Gzip (class in bidsschematools.types.context) (class in bidsschematools.types.protocols)

I

ignored (bidsschematools.types.context.Dataset attribute) (bidsschematools.types.protocols.Dataset property) isdisjoint() (bidsschematools.types.namespace.NsItemsView method) (bidsschematools.types.namespace.NsKeysView method)

items() (bidsschematools.types.namespace.Namespace method) iterencode() (bidsschematools.types.namespace.MappingEncoder method)

J

json (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property)

jsonschema_validator() (in module bidsschematools.utils)

K

keys() (bidsschematools.types.namespace.Namespace method)

L

load() (in module bidsschematools.data)

load_schema() (in module bidsschematools.schema) log_errors() (in module bidsschematools.validator)

M

m0scan (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) M0scan (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) magnitude (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Magnitude (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) magnitude1 (bidsschematools.types.context.Associations attribute) (bidsschematools.types.protocols.Associations property) Magnitude1 (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) make_columns_table() (in module bidsschematools.render.tables) make_entity_definitions() (in module bidsschematools.render.text) make_entity_table() (in module bidsschematools.render.tables) make_filename_template() (in module bidsschematools.render.text) make_glossary() (in module bidsschematools.render.text) make_json_table() (in module bidsschematools.render.tables) make_metadata_table() (in module bidsschematools.render.tables) make_sidecar_table() (in module bidsschematools.render.tables) make_subobject_table() (in module bidsschematools.render.tables) make_suffix_table() (in module bidsschematools.render.tables) MappingEncoder (class in bidsschematools.types.namespace) maybe() (bidsschematools.expressions.BinOp class method) (bidsschematools.expressions.RightOp class method)

modalities (bidsschematools.types.context.Dataset attribute) (bidsschematools.types.protocols.Dataset property) modality (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) module bidsschematools bidsschematools.data bidsschematools.expressions bidsschematools.render bidsschematools.render.tables bidsschematools.render.text bidsschematools.render.tsv bidsschematools.render.utils bidsschematools.rules bidsschematools.schema bidsschematools.types bidsschematools.types.context bidsschematools.types.namespace bidsschematools.types.protocols bidsschematools.utils bidsschematools.validator mrs (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property)

N

n_cols (bidsschematools.types.context.Bval attribute) (bidsschematools.types.context.Bvec attribute) (bidsschematools.types.protocols.Bval property) (bidsschematools.types.protocols.Bvec property) n_rows (bidsschematools.types.context.Aslcontext attribute) (bidsschematools.types.context.Bval attribute) (bidsschematools.types.context.Bvec attribute) (bidsschematools.types.protocols.Aslcontext property) (bidsschematools.types.protocols.Bval property) (bidsschematools.types.protocols.Bvec property)

Namespace (class in bidsschematools.types.namespace) nifti_header (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) NiftiHeader (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) normalize_breaks() (in module bidsschematools.render.utils) normalize_requirements() (in module bidsschematools.render.utils) NsItemsView (class in bidsschematools.types.namespace) NsKeysView (class in bidsschematools.types.namespace) NsValuesView (class in bidsschematools.types.namespace) num2words() (in module bidsschematools.render.utils)

O

Object (class in bidsschematools.expressions) ome (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property)

Ome (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) onset (bidsschematools.types.context.Events attribute) (bidsschematools.types.protocols.Events property)

P

parse() (in module bidsschematools.expressions) participant_id (bidsschematools.types.context.Subjects attribute) (bidsschematools.types.protocols.Subjects property) path (bidsschematools.types.context.Aslcontext attribute) (bidsschematools.types.context.Bval attribute) (bidsschematools.types.context.Bvec attribute) (bidsschematools.types.context.Channels attribute) (bidsschematools.types.context.Context attribute) (bidsschematools.types.context.Coordsystem attribute) (bidsschematools.types.context.Electrodes attribute) (bidsschematools.types.context.Events attribute) (bidsschematools.types.context.M0scan attribute) (bidsschematools.types.context.Magnitude attribute) (bidsschematools.types.context.Magnitude1 attribute) (bidsschematools.types.protocols.Aslcontext property) (bidsschematools.types.protocols.Bval property) (bidsschematools.types.protocols.Bvec property) (bidsschematools.types.protocols.Channels property) (bidsschematools.types.protocols.Context property) (bidsschematools.types.protocols.Coordsystem property) (bidsschematools.types.protocols.Electrodes property) (bidsschematools.types.protocols.Events property) (bidsschematools.types.protocols.M0scan property) (bidsschematools.types.protocols.Magnitude property) (bidsschematools.types.protocols.Magnitude1 property)

phase (bidsschematools.types.context.DimInfo attribute) (bidsschematools.types.protocols.DimInfo property) PhysicalSizeX (bidsschematools.types.context.Ome attribute) (bidsschematools.types.protocols.Ome property) PhysicalSizeXUnit (bidsschematools.types.context.Ome attribute) (bidsschematools.types.protocols.Ome property) PhysicalSizeY (bidsschematools.types.context.Ome attribute) (bidsschematools.types.protocols.Ome property) PhysicalSizeYUnit (bidsschematools.types.context.Ome attribute) (bidsschematools.types.protocols.Ome property) PhysicalSizeZ (bidsschematools.types.context.Ome attribute) (bidsschematools.types.protocols.Ome property) PhysicalSizeZUnit (bidsschematools.types.context.Ome attribute) (bidsschematools.types.protocols.Ome property) pixdim (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property) pop() (bidsschematools.types.namespace.Namespace method) popitem() (bidsschematools.types.namespace.Namespace method) Property (class in bidsschematools.expressions)

Q

qform_code (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property)

R

readable() (bidsschematools.data.load method) regexify_all() (in module bidsschematools.rules) regexify_filename_rules() (in module bidsschematools.rules)

render_text() (in module bidsschematools.render.text) resolve_metadata_type() (in module bidsschematools.render.utils) RightOp (class in bidsschematools.expressions)

S

sampling_frequency (bidsschematools.types.context.Channels attribute) (bidsschematools.types.protocols.Channels property) schema (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) select_schema_path() (in module bidsschematools.validator) ses_dirs (bidsschematools.types.context.Sessions attribute) (bidsschematools.types.protocols.Sessions property) session_id (bidsschematools.types.context.Sessions attribute) (bidsschematools.types.protocols.Sessions property) sessions (bidsschematools.types.context.Subject attribute) (bidsschematools.types.protocols.Subject property) Sessions (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) set_logger_level() (in module bidsschematools.utils) setdefault() (bidsschematools.types.namespace.Namespace method) sform_code (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property) shape (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property)

short_channel (bidsschematools.types.context.Channels attribute) (bidsschematools.types.protocols.Channels property) sidecar (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) size (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) slice (bidsschematools.types.context.DimInfo attribute) (bidsschematools.types.protocols.DimInfo property) sub_dirs (bidsschematools.types.context.Subjects attribute) (bidsschematools.types.protocols.Subjects property) subject (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) Subject (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) subjects (bidsschematools.types.context.Dataset attribute) (bidsschematools.types.protocols.Dataset property) Subjects (class in bidsschematools.types.context) (class in bidsschematools.types.protocols) suffix (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property)

T

t (bidsschematools.types.context.XyztUnits attribute) (bidsschematools.types.protocols.XyztUnits property) tiff (bidsschematools.types.context.Context attribute) (bidsschematools.types.protocols.Context property) Tiff (class in bidsschematools.types.context) (class in bidsschematools.types.protocols)

timestamp (bidsschematools.types.context.Gzip attribute) (bidsschematools.types.protocols.Gzip property) tree (bidsschematools.types.context.Dataset attribute) (bidsschematools.types.protocols.Dataset property) type (bidsschematools.types.context.Channels attribute) (bidsschematools.types.protocols.Channels property)

U

update() (bidsschematools.types.namespace.Namespace method)

V

validate_all() (in module bidsschematools.validator) validate_bids() (in module bidsschematools.validator) validate_schema() (in module bidsschematools.schema) value_key_table() (in module bidsschematools.render.text) values (bidsschematools.types.context.Bval attribute) (bidsschematools.types.protocols.Bval property)

values() (bidsschematools.types.namespace.Namespace method) version (bidsschematools.types.context.Tiff attribute) (bidsschematools.types.protocols.Tiff property) volume_type (bidsschematools.types.context.Aslcontext attribute) (bidsschematools.types.protocols.Aslcontext property) voxel_sizes (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property)

W

write_report() (in module bidsschematools.validator)

X

xyz (bidsschematools.types.context.XyztUnits attribute) (bidsschematools.types.protocols.XyztUnits property) xyzt_units (bidsschematools.types.context.NiftiHeader attribute) (bidsschematools.types.protocols.NiftiHeader property)

XyztUnits (class in bidsschematools.types.context) (class in bidsschematools.types.protocols)